meanwhile -- uploaded to Debian experimental and all releases on
NeuroDebian. While testing the installation I ran into a few issues
while sklearn.test():
* bulk of repeating deprecation warnings
* some failures from nose (I think similar ones were reported before to
be ignored -- correct me if I am wrong)
* failing doctests.
Here is the output I am getting:
$> ipython
impoPython 2.7.3 (default, Aug 26 2012, 11:57:48)
Type "copyright", "credits" or "license" for more information.
IPython 0.13 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object', use 'object??' for extra details.
r
Welcome to pylab, a matplotlib-based Python environment [backend: TkAgg].
For more information, type 'help(pylab)'.
In [1]: import sklearn
In [2]: sklearn.test()
Running unit tests and doctests for sklearn
/usr/lib/python2.7/dist-packages/nose/util.py:14: DeprecationWarning: The compiler package is deprecated and removed in Python 3.x.
from compiler.consts import CO_GENERATOR
NumPy version 1.6.2
NumPy is installed in /usr/lib/pymodules/python2.7/numpy
Python version 2.7.3 (default, Aug 26 2012, 11:57:48) [GCC 4.7.1]
nose version 1.1.2
I: Seeding RNGs with 236262593
......................................................S.2.17927109077 55.4082834902
.......None
..............EE..SS.......................................................S......................................................SEE.............................................................................................................................EE........S......................---
...................................................................................................................................................../usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:267: UserWarning: Objective did not converge for target 0, you might want to increase the number of iterations
' to increase the number of iterations')
............../usr/lib/pymodules/python2.7/sklearn/metrics/cluster/supervised.py:775: RuntimeWarning: underflow encountered in double_scalars
emi += (term1[nij] * term2 * term3)
.../usr/lib/pymodules/python2.7/numpy/core/fromnumeric.py:2374: RuntimeWarning: invalid value encountered in double_scalars
return mean(axis, dtype, out)
........................................................................................................................................../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class NuSVC is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVC instead
warnings.warn(msg, category=DeprecationWarning)
./usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class NuSVR is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVR instead
warnings.warn(msg, category=DeprecationWarning)
./usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
./usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVR is deprecated; to be removed in v0.14;
use sklearn.svm.SVR instead
warnings.warn(msg, category=DeprecationWarning)
............................/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
...../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class NuSVR is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVR instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class NuSVR is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVR instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVR is deprecated; to be removed in v0.14;
use sklearn.svm.SVR instead
warnings.warn(msg, category=DeprecationWarning)
..../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class NuSVC is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVC instead
warnings.warn(msg, category=DeprecationWarning)
...../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
......../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class NuSVC is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVR is deprecated; to be removed in v0.14;
use sklearn.svm.SVR instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class NuSVR is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVR instead
warnings.warn(msg, category=DeprecationWarning)
.....EEE............./usr/lib/pymodules/python2.7/sklearn/tree/tree.py:525: RuntimeWarning: divide by zero encountered in log
proba[k] = np.log(proba[k])
....FE..................................................../usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:597: UserWarning: precompute is ignored for sparse data
warnings.warn("precompute is ignored for sparse data")
/usr/lib/pymodules/python2.7/sklearn/qda.py:105: UserWarning: Variables are collinear
warnings.warn("Variables are collinear")
./usr/lib/pymodules/python2.7/sklearn/pls.py:284: UserWarning: X scores are null at iteration 1
warnings.warn('X scores are null at iteration %s' % k)
/usr/lib/pymodules/python2.7/sklearn/decomposition/nmf.py:497: UserWarning: Iteration limit reached during fit
warnings.warn("Iteration limit reached during fit")
/usr/lib/pymodules/python2.7/sklearn/decomposition/pca.py:337: DeprecationWarning: Using dim is deprecatedsince version 0.12, and backward compatibility won't be maintained from version 0.14 onward.
n_components = self.dim
..../usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:131: NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
/usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:159: NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
/usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:131: NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
/usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:159: NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
./usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:131: NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
./usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:760: DeprecationWarning: Use alpha_. Using alpha is deprecatedsince version 0.12, and backward compatibility won't be maintained from version 0.14 onward.
DeprecationWarning, stacklevel=1)
/usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:760: DeprecationWarning: Use alpha_. Using alpha is deprecatedsince version 0.12, and backward compatibility won't be maintained from version 0.14 onward.
DeprecationWarning, stacklevel=1)
./usr/lib/pymodules/python2.7/sklearn/pls.py:62: UserWarning: Maximum number of iterations reached
warnings.warn('Maximum number of iterations reached')
/usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:760: DeprecationWarning: Use alpha_. Using alpha is deprecatedsince version 0.12, and backward compatibility won't be maintained from version 0.14 onward.
DeprecationWarning, stacklevel=1)
/usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:760: DeprecationWarning: Use alpha_. Using alpha is deprecatedsince version 0.12, and backward compatibility won't be maintained from version 0.14 onward.
DeprecationWarning, stacklevel=1)
............/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to beemoved in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SV is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DepretionWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utilsinit__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
...................................SSS....S....S...........................................................................................EE
======================================================================
ERROR: Doctest: sklearn.datasets.base.load_sample_image
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.datasets.base.load_sample_images
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.ensemble.gradient_boosting.GradientBoostingClassifier
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.ensemble.gradient_boosting.GradientBoostingRegressor
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.linear_model.randomized_l1.RandomizedLasso
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.linear_model.randomized_l1.RandomizedLogisticRegression
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.tree.tree.DecisionTreeClassifier
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttribuError: _
======================================================================
ERROR: Doctest: sklearn.tree.tree.DecisionTreeRegressor
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.tree.tree.export_graphviz
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.utils.extmath.pinvh
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn._NoseTester.test
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.test
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395, in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
FAIL: Doctest: sklearn.utils.extmath.pinvh
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2201, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for sklearn.utils.extmath.pinvh
File "/usr/lib/pymodules/python2.7/sklearn/utils/extmath.py", line 302, in pinvh
----------------------------------------------------------------------
File "/usr/lib/pymodules/python2.7/sklearn/utils/extmath.py", line 336, in sklearn.utils.extmath.pinvh
Failed example:
B = pinvh(a)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1289, in __run
compileflags, 1) in test.globs
File "<doctest sklearn.utils.extmath.pinvh[3]>", line 1, in <module>
B = pinvh(a)
NameError: name 'pinvh' is not defined
----------------------------------------------------------------------
File "/usr/lib/pymodules/python2.7/sklearn/utils/extmath.py", line 337, in sklearn.utils.extmath.pinvh
Failed example:
allclose(a, dot(a, dot(B, a)))
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1289, in __run
compileflags, 1) in test.globs
File "<doctest sklearn.utils.extmath.pinvh[4]>", line 1, in <module>
allclose(a, dot(a, dot(B, a)))
NameError: name 'B' is not defined
----------------------------------------------------------------------
File "/usr/lib/pymodules/python2.7/sklearn/utils/extmath.py", line 339, in sklearn.utils.extmath.pinvh
Failed example:
allclose(B, dot(B, dot(a, B)))
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1289, in __run
compileflags, 1) in test.globs
File "<doctest sklearn.utils.extmath.pinvh[5]>", line 1, in <module>
allclose(B, dot(B, dot(a, B)))
NameError: name 'B' is not defined
----------------------------------------------------------------------
Ran 950 tests in 129.647s
FAILED (SKIP=11, errors=12, failures)
Out[2]: <nose.result.TextTestResult run=950 errors=12 failures=1>
Post by Yaroslav Halchenkook
https://github.com/scikit-learn/scikit-learn/issues/1121
Post by Andreas MüllerHi Yaroslav.
Thanks for investigating.
This is a bit unexpected as it seems to work on jenkins.
Maybe this is 32bit?
We could also try to make the test more robust.
Nelle has been looking into the algorithms a bit lately,
maybe she has some ideas.
Otherwise just skip the test for the moment and we can open
an issue and try to fix it for the future.
We might also look into having another version build on jenkins.
Olivier, do you think that is possible?
Cheers,
Andy
--
Yaroslav O. Halchenko
Postdoctoral Fellow, Department of Psychological and Brain Sciences
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik